AEPSi will allow you to score a child who may be on both level 1 and level 2.
You will need to:
1) click on child's profile
2) once in the profile, click on edit profile.
3) You will need to click on either level 1 or 2 whichever you are ready to work on.
4)When you need to work on the other, just go back into the profile and change the level.
You can finalize an area without needing to complete all 6 areas from each level. This works well for children who are on level 1 in some areas and level 2 in others or for children who need both levels in an area/s.